Golden Macaque Slot

Synatom Research, Princeton, New Jersey, United States
//dx.doi.org/10.13070/mm.en.2.201

Situs slot online terpopuler seperti VIVA99 memiliki 14 games slot online terlengkap 2021, berbagai macam tipe judi slot ini bisa di main kan cukup dengan 1 ID terdaftar, oh iya sebagai informasi, 1 ID ini juga bisa di gunakan untuk 6 kategori judi online yang paling banyak di mainkan 2021. Provides purified RNA for RT-PCR, real-time RT-PCR, differential display, cDNA synthesis, northern blotting, dot and slot blot, primer extension, poly A RNA selection, RNase/S1 nuclease protection and microarrays: Can be used to isolate up to 100 µg of total RNA using the mini kit, or up to 45 µg of total RNA using the micro kit.

Password requirements: 6 to 30 characters long; ASCII characters only (characters found on a standard US keyboard); must contain at least 4 different symbols. We would like to show you a description here but the site won’t allow us. For a more classic style slot, try Novomatic’s Pharaoh's Gold II Deluxe. You could land up to 9000 credits as you spin. With free spins, win multipliers, and a gamble game, this game has lots of treasure to uncover. A Slot Filled with Treasures Untold. The Pharaoh's Daughter slot machine is a beautiful game that offers a lot of chances to win.

last modified : 2021-01-24; original version : 2012-08-22
MATER METHODS 2012;2:201

This article summarizes commonly used methods and kits for RNA extraction, presents the results of a survey conducted by Labome of randomly selected formal articles on RNA extraction and purification, and discusses recent comparison studies and two most popular extraction kits TRIzol and RNeasy.

DNA extraction methods cannot be directly applied to RNA as RNA is structurally very different from DNA. RNA is single-stranded, while DNA is mostly double-stranded. It is often difficult to isolate intact RNA. RNases, a group of enzymes that degrade RNA molecules, are abundant in the environment, including on hands and on surfaces and it is difficult to remove/destroy RNases completely. RNA isolation therefore requires cautious handling of samples and good aseptic techniques. It is important to use only RNase-free solutions during the extraction, as well as RNase-free pipet tips and glassware.

RNA storage and stability

RNAlater solutions from Thermo Fisher and QIAGEN are used by many researchers during RNA isolation, both for stabilizing cellular RNA in tissue samples, and for stabilizing final purified RNA. Ambient storage of tissue samples in RNAlater preserves RNA integrity similarly as storage at low temperature [4, 5]. RNAlater is based on the inhibition of RNAses by sulfate salts such as ammonium sulfate at specific pH [6]. RNA quality can be checked using agarose gel electrophoresis. For long-term storage, RNA should be kept at -80°C in single-use aliquots, while the ethanol precipitate of RNA can be stored at -20°C.

MethodTypical kit
Guanidinium-acid-phenol ExtractionTRIzol and TRI reagent
Silica technology, glass fiber filtersRNeasy and its variations
Density gradient centrifugation using cesium chloride or cesium trifluoroacetate
Magnetic bead technologyDynabeads mRNA DIRECT Micro
Lithium chloride and urea isolation
Oligo(dt)-cellulose column chromatography
Non-column poly (A)+ purification/isolation
Table 1. RNA extraction methods and typical kits.
Determining RNA quality and quantity

RNA quality can be determined by examining the ratio of absorption at 260 nm and 280 nm with UV spectrophotometry. For high-quality RNA, A260/A280 ratio should be in the range of 1.9–2.1. RNA can be quantified by measuring the absorption at 260 nm, where 1 absorbance unit is equal to 40 μg/ml, at a pH of about 7.5. The validity of this ratio as a measurement of RNA purity was challenged [7]. In addition, the quality of total RNA preparations should be examined through electrophoresis, where both 18S and 28S RNA bands should be very prominent, with the 28S RNA band about twice as intense as the 18S band. Qubit assays, provided by ThermoFisher Scientific, can also quantity RNA samples and assess their quality. Deming et al examined the quality of RNA preparations from parietal lobe tissues of postmortem frozen human brains with RNA 6000 Pico Assay using Bioanalyzer 2100 from Agilent Technologies [8]. Garrett-Bakelman FE et al used RNA Nano kit from Agilent on a Bioanalyzer 2100 from Agilent to examine the quality of RNA preparations from NASA twin astronaut blood samples [9].

Cell lysis and dissolutionCell lysis can be achieved using buffers or reagents containing chaotropic agents such as guanidinium isothiocyanate, guanidinium chloride, sodium dodecyl sulphate (SDS), sarcosyl, urea, phenol or chloroform. TRIzol or RNAlater or Qiazol [10] can be used to maintain RNA integrity during lysis.
Denaturation of DNA and proteinsDNase can be used to degrade DNA, while proteinase K can be added to digest proteins. Alternatively, repeated organic extraction using phenol and chloroform, or dissolving the sample in buffers containing guanidinium salts, can also be used to remove proteins.
Denaturation and inactivation of RNasesThis can be achieved using any of the chaotropic agents mentioned above, such as phenol and chloroform.
Removal/separation of cellular componentsRNA can be separated from other cellular components by adding chloroform and centrifuging the solution. This separates the solution into two phases: organic and aqueous phases. The aqueous phase contains RNA.
PrecipitationRNA is often recovered from the aqueous phase using isopropyl alcohol. RNA can also be selectively precipitated from DNA through the use of ammonium acetate. Alternatively, lithium chloride can be used to selectively precipitate RNA from DNA as well as proteins
Table 2. Basic steps involved in the RNA extraction using organic solvents/chaotropic agents.
RNA Extraction Methods

The major categories of RNA extraction methods are listed in Table 1. Table 2 lists the basic steps involved in the RNA extration using organic solvents/chaotropic agents. Other methods utilize some of the steps or similar steps.

Figure 1. Comparing 14 commercial kits for DNA and RNA extractions from FFPE tissues [1].

Methods for RNA extraction need to be tailored to the organism from which the RNA is being extracted. Plants pose additional challenges due to the presence of secondary metabolites, polyphenols and polysaccharides. The addition of polyvinylpyrrolidone (PVP) to the extraction buffer was shown by Chan et al to aid the removal of phenolic compounds and polysaccharides from mangosteen leaves and flowers [11]. Birtic et al used an optimized concentration of PVP, along with DNase and ethanol precipitation, to isolate high-quality RNA from seeds of five plant species [12], while Xie et al developed modified RNA extraction methods to obtain high-quality RNA from cotton roots [13]. Tattersall et al evaluated 15 methods/kits, and found that tris-lithium chloride and RNeasy Midi+polyethylene glycol gave the best quality RNA from Grapevine leaves — they published their results in American Journal of Enology and Viticulture [14]. Commercially available RNA isolation kits tailored for plants are available, such as Spectrum plant total RNA kit from MilliporeSigma [15-17] and RNeasy plant kits from QIAGEN [15, 18-25] and Macherey-Nagel NucleoSpin RNA Plant Kit [26].

Figure 2. Blood collection tubes and extraction kits were evaluated for mRNA and MiRNA profiling [2].

In order to extract small RNAs from blood and cerebrospinal fluid (CSF), Burgos et al compared ten commercially available RNA-isolation kits: MaxRecovery BiooPure RNA Isolation Reagent (BiooPure; BiooScientific), mirVana miRNA Isolation Kit (mirVana; Thermo Fisher), mirVana PARIS (PARIS; Thermo Fisher), TRI Reagent RT (MRC RT; Molecular Research Center), TRI Reagent RT-Blood (MRC RT-B; Molecular Research Center), TRI Reagent RT-Liquid Samples (MRC RT-LS; Molecular Research Center), RNAzol (Molecular Research Center), miRNeasy (QIAGEN), PureLink microRNA Isolation Kit (PureLink; Thermo Fisher), and mirPremier (MilliporeSigma), and found that mirVana PARIS (Thermo Fisher), mirVana (Thermo Fisher), miRNeasy (QIAGEN), and BiooPure were the best, based on small RNA yield [27].

Glycogen can be added during Trizol extraction to facilitate precipitation of small RNAs and to increase RNA recovery [28, 29].

For gene expression studies in small biopsy tissue samples from the equine gastric epithelium, KAPA SYBR qPCR Master Mix (2x) Universal was found to be superior over SYBR® green mixes from qPCRBIO, QuantiNova, or PerfeCTa and the RNA extraction kit GENEzol is better than TRIzol™ or MiniPrep [30].

Patel et al compared the yield and quality of RNA and DNA from 0.6-mm FFPE prostate tissue cores with 14 commercially available kits, and concluded that QIAGEN AllPrep kit is most suitable for FFPE tissue (see figure 1) [1].

A modified RNAzol protocol yielded more abundant amplifiable microRNA as compared to the standard RNAzol protocol [31].

For the extraction of hepatitis C virus RNA in sera from individuals with hyperlipidemia, hyperbilirubinemia and hyperglobulinemia for RT-PCR analysis, silica nanoparticles were found to be superior over both Trizol and guanidine isothiocyanate methods [32].

Figure 3. The result of an evaluation of six RNA extraction kits [3].

Magnetic bead-based RNA extraction modalities were compared [33]. Silica-coated beads for total RNA extraction, oligo (dT) beads for mRNA extraction, and beads functionalized with oligonucleotides complementary to respiratory syncytial virus (RSV) nucleocapsid gene, respectively recovered ∼75, ∼71, and ∼7% target RSV mRNA after a 1 min of incubation time [33]. RSV-specific beads required much longer incubation times to recover amounts of the target comparable to the other beads (∼77% at 180 min) [33]. The silica-coated beads are suitable for applications that require nucleic acids other than mRNA, especially with detection strategies that are tolerant of a high concentration of nontarget background nucleic acids, such as RT-PCR [33].

RNA quantity and quality were evaluated for mRNA and miRNA profiling with PAXgene and Tempus blood collection tubes and six kits: QIAGEN PAXgene Blood miRNA Kit, Thermo Fisher MagMAX for Stabilized Blood Tubes RNA Isolation Kit, and Norgen Biotek Preserved Blood RNA Purification Kit I and Kit II, and QIAGEN QIAsymphony and Thermo Fisher MagMAX Express-96 Magnetic Particle Processor (see figure 2) [2].

RNAqueous kit (Thermo Fisher), Micro-to-midi total RNA purification system (Thermo Fisher), NucleoSpin RNA II (BD), GenElute mammalian total RNA kit (MilliporeSigma), RNeasy mini kit (QIAGEN), and TRIzol LS reagent (Thermo Fisher) were evaluated for RNA extraction on blood, tonsil, liver, kidney, spleen, bladder, heart, submandibular lymph node from pig infected with classical swine fever virus (CSFV). All extraction kits yielded RNA for positive results in RT-PCR for CSFV, and conventional RT-PCR detected both CSFV and porcine beta-actin in all RNA preparations (RNA extracted from blood by TRIzol LS reagent needed to be 1:2, 1:4, or up to 1:64 in nuclease-free water). TRIzol LS reagent constantly had the highest yield and RNAqueous kit had the highest A260/A280 ratio. NucleoSpin RNA II and GenElute mammalian total RNA kit removed DNA contaminants better [34].

When compared to guanidine isothiocyanate-based techniques, the silica-membrane-based method yielded similar quality and quantity from both fresh and frozen mouse lung tissues and conserved better the intactness of ribosome RNA and short-, medium-, and longer-sized RNA fragments [35].

Figure 3 shows the result of another evaluation of six RNA extraction kits, indicating that all non-phenol-based kits yielded high-quality RNA and one of them AxyPrep Multisource Total RNA Miniprep Kit eliminated genomic DNA contamination completely and in general was much superior over other five kits [3].

Method/KitVendorNumSample Reference
RNeasy (MinElute [36], miRNeasy [37, 38], Universal [39] )QIAGEN361 [40, 41]
TRIzol/TRI ReagentThermo Fisher, MilliporeSigma332 [42, 43]
RNase free DNaseThermo Fisher, Promega, QIAGEN30 [44]
RNAlaterThermo Fisher, QIAGEN25 [45]
Pico Pure RNA isolation kitThermo Fisher12
Nucleospin RNA kitsMacherey-Nagel13#740955 [46]
mirVANA microRNA isolation kitThermo Fisher15 [42]
Absolutely KitsStratagene, Agilent Technologies8
SV total RNA isolation kitPromega5
RNAqueous KitThermo Fisher9
AllPrep DNA/RNA Micro KitQIAGEN880204 [9]
GenElute Mammalian Total RNA Miniprep kitMilliporeSigma4
Direct-zolZymo Research3 [47-49]
peqGOLD RNA kitsPeqLab Biotechnologie3
MagMaxThermo Fisher3 [50]
RecoverALL Total Nucleic Acid Isolation Kit for FFPEThermo Fisher1 [51]
Maxwell RSC simplyRNA TissuePromega1 [52]
Maxwell 16 LEV RNA FFPEPromega1 [52]
PureLink PlantThermo Fisher1 [53]
RNAClean XPBeckman Coulter1 [54]
Dynabeads mRNA DIRECTThermo Fisher1 [55]
NucleoSpin RNA set for NucleoZOLMacherey-Nagel1 [56]
Quick-RNA MicroPrepZymo Research1 [57]
Table 3. Commonly used reagents, methods or kits for RNA extraction among formal articles surveyed by Labome. Major suppliers are listed. Num: the number of articles.
RNA Isolation Reagents and Kits in the Literature

Labome conducts surveys of randomly selected formal articles citing RNA extraction kits. Table 3 lists reagents, methods or kits that are cited most frequently. The sample types that the kits can process (animal cells, plants, etc.) are shown in Table 4. An overview of the kits including their applications, sample sizes, and particular advantages is presented in Table 5.

Two most commonly used kits are RNeasy kits from QIAGEN and TRIzol from Thermo Fisher. RNase-free DNase is used specifically for RNA purification by removing all contaminating genomic DNA. Although commercial kits are most often used, a few studies still use basic organic solvent extraction methods. For example, Meertens L et al purified viral RNA produced through the mMESSAGE mMACHINE SP6 or T7 Transcription Kit from Thermo Fischer Scientific with phenol:chloroform extraction and isopropanol precipitation [58].

KitSource
Animal cells and tissuesBloodBacteriaVirusesFungiYeastPlants
TRIzol Reagent (Thermo Fisher)******
RNeasy kits (QIAGEN)*****
Pico Pure RNA isolation kit (Thermo Fisher)*
mirVANA microRNA isolation kit (Thermo Fisher, Thermo Fisher)*****
Absolutely Total RNA, miRNA & mRNA Purification Kits (Stratagene, Agilent technologies)*
SV total RNA isolation kit (Promega)****
RNAqueous Kit (Thermo Fisher)*****
AllPrep DNA/RNA Micro Kit (QIAGEN)*
GenElute Mammalian Total RNA Miniprep kit*
Spectrum Plant Total RNA kit (MilliporeSigma)***
peqGOLD Total RNA kits (PeqLab biotechnologie)*
RNAlater (Thermo Fisher)***
Table 4. Sample types that different kits can process.
Major suppliers for RNA extraction reagents and kits

Over the years, Thermo Fisher obtained many brands providing RNA extraction kits, including Ambion, Applied Biosystems, Arcturus, Invitrogen, and Life Technologies. TRIzol (discussed below in more detail) is the most commonly used Thermo Fisher reagent for RNA extraction. Other Thermo Fisher kits that have been used for RNA isolation include PureLink Plant [53], MagMax-96 Total RNA Isolation Kit (good for samples with low cell numbers) [59], LeukoLOCK total RNA 448 isolation system with MagMax technology [50], Purelink RNA Mini kit [60], Dynabeads mRNA Purification Kit [55] and Arcturus PicoPure RNA isolation kit [61, 62]. For example, Nagamatsu G et al isolated mRNA from mouse oocytes with the Dynabeads mRNA DIRECT Micro Kit from Invitrogen for RNA-seq analysis to investigate the dormancy of immature oocytes in primordial follicles [55]. Wang Y et al obtained RNA from microchip-captured circulating tumor cells for RT-PCR with Arcturus PicoPure RNA Extraction buffer [62].

QIAGEN

RNeasy kits (discussed below in more detail) is the most commonly cited RNA extraction method. Besides RNeasy kits, QIAGEN RNA extraction products cited in the survey include QIAzol (optimized for fatty tissues) [63], RNase-free DNase [64] and AllPrep DNA/RNA Micro Kit [65, 66], miRNeasy kit [10, 37, 67], Oligotex kit [68, 69], mRNA isolation/purification kit [70], RNA protect Bacteria Reagent [71], and QIAamp kits [72, 73]. For example, Abbink P et al extracted RNA from rhesus macaque plasma and viral stock using QIAamp Viral RNA mini kit for viral sequencing [72]. Chopra S et al extracted total RNA for RT-PCR from mouse bone marrow–derived dendritic cells, human monocyte–derived dendritic cells, and leukocytes recovered from mouse peritoneal lavage samples with RNeasy Mini kit or QIAzol lysis reagent [63].

Poker slots free online. Kits supplied by MilliporeSigma that have been used for RNA isolation include GenElute Mammalian Total RNA Miniprep kit [74], Plant Total RNA Kit [15], Spectrum Plant Total RNA kit [16, 17], and TRI reagents [75, 76]. MilliporeSigma also distributes kits and reagents provided by Roche, such as RNase free DNase and High Pure RNA Isolation kit.

Stratagene/Agilent technologies

RNA isolation kits provided by Stratagene include Absolutely kits [77, 78] and RNA 6000 kits [79, 80].

RNA isolation kits available from Promega include SV total RNA isolation kit [81-83] and RNase-free DNase [84, 85], and the PolyAtract mRNA isolation system [47].

Macherey-Nagel

NucleoSpin kits [46, 78], nucleobond RNA/DNA 400 column [86] are from Macherey-Nagel. Hyun Y et al purified total RNA, containing small RNA (< 200 nt), from plant tissues by using the NucleoSpin RNA set for NucleoZOL [56].

D Cervettini et al extracted tRNAs from bacteria with phenol and centrifugation [87]. Stadtmauer EA et al extracted total RNA from human whole marrow using Ribopure blood kits from Ambion [88] Corman VM et al extracted RNA with Roche MagNA Pure 96 system (based on magnetic glass bead technique) from sputum, nose and throat swab clinical samples for real-time RT-PCR to detect 2019-nCoV [89]. Nott A et al collected cells in Trizol and purified RNA with the Zymo kit from Zymo Research [90]. Nam S et al isolated RNA using RNAClean XP from Beckman Coulter (A63987) from fly larval brains and purified polyA mRNA using the NEBNext Poly(A) mRNA Magnetic Isolation Module Kit from NEB (E7490) for RNA-seq to study sex-linked tumor dimorphism [54]. Noda S et al isoloated total RNA from primary dental pulp stem cells with QuickGene-Mini80 from Kurabo for real-time PCR analysis [91]. Litke JL et al purified RNA from in vitro transcription reactions with the RNA Clean & Concentrator kit from Zymo Research (R1015) [92]. Huang H et al employed Direct-zol kit from Zymo and Dynabeads mRNA DIRECT kit from Thermo Fisher Scientific to obtain mRNA from HepG2 cells for m6A-seq [47]. Direct-zol kit is gaining popularity for RNA extraction from bacteria [48] and from cultured cells and tissues [49].

Method/KitApplicationsSample size & processingAdvantages
TRIzol Reagent (Thermo Fisher)Provides high-quality RNA for RT-PCR, northern blotting, nuclease protection assays, cloning, real-time PCR and cDNA library construction.Can be used for small samples of tissue (50-100 mg) and cells (5 × 106), and also for larger samples of tissue (≥1 g) and cells (>107)It is a complete ready to use reagent for RNA isolation. It isolates transcriptome RNA, total RNA and micro RNA. Can simultaneously isolate RNA, DNA and protein from a sample, in approximately 1 hour.
RNeasy kits (QIAGEN)Provides purified RNA for RT-PCR, real-time RT-PCR, differential display, cDNA synthesis, northern blotting, dot and slot blot, primer extension, poly A RNA selection, RNase/S1 nuclease protection and microarraysCan be used to isolate up to 100 µg of total RNA using the mini kit, or up to 45 µg of total RNA using the micro kit. TheRNeasy mini kit can be used for up to 1 mg of RNA and RNeasy maxi kit can be used for up to 6 mg of RNA. Isolates and provides high-quality RNA in minutes.It employs a fast procedure, and gives consistent yields even from small samples. It does not require phenol/chloroform extraction, CsCl gradients, LiCl or ethanol precipitation.
RNase free DNase I (Thermo Fisher)Provides purified RNA for ribonuclease protection assays, cDNA library contraction, and RT-PCROne Molecular Biology Unit (MBU) of RNase-Free DNase I digests 1 µg of pUC19 DNA to oligodeoxynucleotides in 10 minutes at 37oC under standard assay conditions.It removes contaminating DNA from total RNA preparations, while maintaining the integrity of the RNA. For best results, it requires bivalent cations such as Mg2+and Ca2+, and a pH of 7.8. It can also be used for characterization of DNA-protein interactions by DNase I footprinting [93].
Pico Pure RNA isolation kit (Thermo Fisher)Provides high-quality RNA for real-time PCR and microarray analysisIt gives consistent RNA recovery from as few as ten cells, using LCM (laser capture microdissection) to prepare samples.It can be used to isolate high-quality RNA from even a single cell. It gives efficient and consistent RNA recovery. It gives small elution volumes thereby maximizing the concentration of recovered RNA. It retains low abundance RNA. Prevents sample contamination by using RNase free column lids.
mirVANA microRNA isolation kit (Thermo Fisher)It can be used for miRNA, siRNA, shRNA, and snRNA analysis. Provides purified RNA for microRNA analysis and microarray analysis.It isolates total RNA within a size range of kilobases to 10-mers, from samples of 102– 107 cultured cells or 0.5 – 250 mg tissue. It can isolate RNA in about 30 minutes.It employs a simple and efficient procedure. It can be used for most types of tissues and cells. It also purifies RNA molecules of ≤ 200 nucleotides from larger RNA molecules, thereby enriching miRNAs, siRNAs, and/or snRNAs.
Absolutely Total RNA, miRNA & mRNA Purification Kits (Stratagene, Agilent technologies)It provides high-quality RNA for northern blotting, RT-PCR, qRT-PCR, microarray target labeling, in-vitro transcription reactions,ribonuclease protection assays, and cDNA synthesis and library construction.Purified RNA can be recovered in ≤ 30 minutes. It is available in miniprep, microprep, nanoprep and 96 well versions. The Absolutely RNA Nanoprep Kit can isolate RNA from even a single cell and can be used for small samples, in an elution volume of 10 μl.It uses a simple, safe and fast procedure that does not require organic extraction using phenol. It provides flexibility in primer design by completely removing genomic DNA.
SV total RNA isolation kit (Promega)Provides high-quality RNA for molecular biology applications including RT-PCR, and northern blotting60 mg of tissue can be processed per purification. RNA can be isolated in ≤ 1 hour. The sample can be purified using two methods, which include microcentrifugation (spin) and vacuum.It uses a simple and fast procedure. The procedure includes a DNase treatment step to reduce genomic DNA contamination, without any DNase carryover in the final purified RNA. Does not require phenol-chloroform and ethanol precipitation.
RNAqueous Kit (Thermo Fisher)Provides RNA for RT-PCR (endpoint), cDNA library construction, nuclease protection assays, northern blotting and real-time PCR.It can isolate DNA from 0.1 g to 0.5 g of tissue or 107-108cellsThe procedure used does not require phenol. It utilizes a convenient syringe-based filtration. It can be used with vacuum manifolds to process multiple samples simultaneously.
AllPrep DNA/RNA Micro Kit (QIAGEN)The purified total RNA is suitable for RT-PCR and real-time RT-PCR; differential display; cDNA synthesis; northern-, dot-, and slot-blot analyses; and microarrays. Purified genomic DNA is suitable for Southern-, dot-, and slot-blot analyses; and PCR and multiplex PCR.It can be used with up to 107 cells or 30 mg tissue. Total RNA is of high quality and has a RIN value of 10 indicating that the RNA is intact.Simultaneous purification of both genomic DNA and total RNA. Purified genomic DNA has an average length of 15–30 kb depending on homogenization conditions.
GenElute Mammalian Total RNA Miniprep kit (MilliporeSigma)It provides purified DNA for various downstream applications including reverse transcription, PCR, labeling and microarray analysis. It does not recover RNA molecules smaller than 200 nucleotides.It can be used for up to 107 cells or 40 mg of tissue, and can recover RNA from as few as 100 cells. It yields up to 150 μg of purified RNA in an elution volume of 50-100 μl, per preparation in ≤ 30 minutes.Uses a simple and efficient procedure that can process up to 12 to 18 preps in about 30 minutes. It implies that it gives 40% more purifications per kit than the leading supplier. It does not use cesium chloride gradients, alcohol precipitation, and hazardous organic compounds such as phenol and chloroform.
Spectrum Plant Total RNA kit (MilliporeSigma)Provides purified RNA for common downstream applications including northern blotting, RT-PCR and qRT=PCR.It can extract up to 100 µg of total RNA from 100 mg of tissue in approximately 30 minutes. Typical yields range from 20–60 µg.It can isolate purified RNA from plant samples containing high levels of secondary metabolites. It can be used for challenging plant tissue samples including pine needles, cotton leaves, grape leaves, and soybean leaves.
peqGOLD Total RNA kits (PeqLab Biotechnologie)It gives purified DNA that can be used for most downstream applications.It isolates RNA molecules ≥ 200 nucleotides, from samples of up to 107 cells or 40 mg tissue in ≤ 25 minutes, in an elution volume of 50-100 µl. A maximum yield of 100 µg/column can be obtained using this kit.It utilizes a simple and fast procedure. It does not require organic extraction and ethanol precipitation. It is specifically recommended for total RNA isolation from adipose tissues. Note: adipose tissues have much less RNA and protein content than other tissue types [94].
RNAlater (Thermo Fisher, Thermo Fisher)It can be used for tissue storage to stabilize and protect cellular RNA until it is processed. It is also used for storage of RNA after RNA isolation and purification. It is compatible with most RNA isolation procedures.It has been used for samples of mammalian tissues, plants, E. coli, Xenopus, fish, and Drosophila. The reagent is economical, can be stored at room temperature and saves time.It is an aqueous, non-toxic tissue storage reagent that immediately inactivates RNase, protecting and stabilizing an RNA sample. It avoids the need to store samples in liquid nitrogen or in freezers. It minimizes freezing and grinding.
Table 5.Overview of kits including applications and particular advantages.
Detailed Discussion on TRIzol/TRI Reagent and RNeasy Kits

RNeasy combines the selective RNA binding of a silica membrane with a fast microspin to extract RNA from sample tissues. It is simple, safe and fast, but more expensive than guanidine isothiocyanate-based techniques. The silica-membrane-based method seemed to be either comparable to or superior over guanidine isothiocyanate-based techniques in terms of RNA yield, RNA quality, and the preservation of intact short, medium and long RNA molecules [35].

RNeasy kits, including the various version like Lipid Tissue Mini [40], are cited most frequently among the articles surveyed by Labome. Zeng Q et al obtained mRNA from cultured cells for RT-PCR with miRNeasy kit (217004) [38]. Hsueh MF et al used the same kit to extract RNA from frozen cartilage tissues for miRNA quantification by real-time polymerase chain reaction [37]. DiTroia SP et al extracted RNA from mouse primordial germ cells for RT-PCR with the Micro kit [95]. Lardennois A et al purified double-stranded RNAs produced by the Ambion mMessage mMachine kit with the RNeasy MinElute Cleanup kit to investigate the role of mechanical forces in body-axis elongation [36]. Wilson ST et al extracted total RNA from polycarbonate filters collecting seawater microorganisms for metatranscriptome analysis using QIAGEN RNeasy Mini Kit, with the addition of Biospec zirconia/silica beads [64]. Deming et al extracted RNA from parietal lobe tissues of postmortem frozen human brains with TissueLyser LT and RNeasy Mini Kit [8]. Lee J et al isolated total mRNA from iPSC-derived cardiomyocytes for qPCR with QIAGEN miRNeasy Mini kit [67]. Kulkarni S et al extracted RNA from peripheral blood lymphocytes with RNeasy Universal kit for RACE application and qPCR of a lncRNA [39]. Zhao N et al used RNeasy Mini Elute Cleanup Kit from QIAGEN to purify mRNA from in vitro transcribed T7-FB-GFP and T7-N × HA-mCh-H2B using mMESSAGE mMACHINE kit from ThermoFisher Scientific for injection into zebrafish embryos [96]. RNeasy variations include RNeasy Plus Mini Kit [45, 97] and RNeasy Micro kit [98], among others.

TRIzol/TRI Reagent

TRIzol reagent by Thermo Fisher (for example, 15596-018 [99] ) and TRI reagent from MilliporeSigma have been used to extract RNA for a wide range of purposes. Duncan A et al purified RNA for RT-PCR from rat habenula tissues with TRIzol Reagent from Thermo Fisher and chloroform/isopropanol precipitation [44]. Zullo JM et al obtained RNA for qPCR from worms with Trizol and chloroform/ethanol treatment [100]. Liu Y et al extracted total RNA from mouse peritoneal macrophages with TRIzol reagent from Invitrogen for m6A dot blot and qPCR [101]. Rosshart SP et al extracted RNA from mouse red blood cells for RNA-seq with TRIzol from Invitrogen Life Technologies to study microbiota and immune responses in laboratory mice born to wild mice [102].

Thermo Fisher’s TRIzol reagent has been used to extract RNA from a multitude of sources, including frozen splenic tissues [103], transfected Hela and HEK293 cells and mouse brain tissues [104], transfected HEK293 cells [92], and plants [105], among others.

Dr. Cox initially introduced guanidinium chloride as a deproteinization agent for RNA isolation in 1968, and over the years it became the favored method for RNA purification. In 1979, Dr. Chirgwin managed to isolate undegraded RNA from pancreas by using guanidinium methods [106]. In 1982, Dr. Feramisco from Cold Spring Harbor Laboratory combined guanidinium with hot phenol for RNA isolation. Dr. Chomczynski in 1986 published a novel approach, which, in a single-step extraction, isolated RNA in 4 hours [107]. The method possessed unique advantages such as short time, high yield, RNA preservation, and large capacity. Dr. Chomczynski and colleagues were granted a patent with the priority date of Jan 28, 1992 (Patent No. US 5346994 A) and the trademark of TRIzol was granted to their organization Molecular Research Center. In the subsequent years, their method and product have been widely used and gained “overwhelming number of citations .. over 20 years” [108]. Molecular Research Center eventually became part of Thermo Fisher, and part of Thermo Fisher in 2013.

Main applications

The TRIzol reagent is mainly used for RNA isolation (including microRNA), DNA isolation and protein isolation from tissues or cells. According to the product manual, isolated RNA can be used in RT-PCR, Northern Blot analysis, Dot Blot hybridization, poly(A)+ selection, in vitro translation, RNase protection assay, and molecular cloning. Isolated DNA can be used in PCR, Restriction Enzyme digestion, and Southern Blots. Isolated protein can be used for Western Blots, recovery of enzymatic activity, and immunoprecipitation.

The TRIzol method is the most widely used method for RNA isolation or DNA and protein isolation. Both DIY and commercial reagent kits can be effective. For the TRIzol method, variations are provided by Thermo Fisher Corporation (and also other providers). Users should read the product sheets, and make a choice based on the type of samples such as solid or liquid sample, cells or bacteria. TRIzol reagent contains chemicals that are toxic, irritant, and corrosive. Direct contact with TRIzol may cause pain, redness, ulcer and scar on the skin. Thus users should always avoid breathing vapor; avoid skin and clothes contact; always wear disposable gloves, and use eye protection, among other safety precautions. Common problems when using TRIzol reagents include low RNA yield, RNA degradation, inhibition of downstream enzymatic reactions, low A260/A280 ratio, contamination with DNA/RNA/protein. Users should consult the product proteins unmasks dynamic gradient of cartilage turnover in human limbs. Sci Adv. 2019;5:eaax3203 pubmedpublisher

Zeng Q, Michael I, Zhang P, Saghafinia S, Knott G, Jiao W, et al. Synaptic proximity enables NMDAR signalling to promote brain metastasis. Nature. 2019;573:526-531 pubmedpublisher
Kulkarni S, Lied A, Kulkarni V, Rucevic M, Martin M, Walker Sperling V, et al. CCR5AS lncRNA variation differentially regulates CCR5, influencing HIV disease outcome. Nat Immunol. 2019;: pubmedpublisher
Labonte B, Abdallah K, Maussion G, Yerko V, Yang J, Bittar T, et al. Regulation of impulsive and aggressive behaviours by a novel lncRNA. Mol Psychiatry. 2020;: pubmedpublisher
Johmura Y, Yamanaka T, Omori S, Wang T, Sugiura Y, Matsumoto M, et al. Senolysis by glutaminolysis inhibition ameliorates various age-associated disorders. Science. 2021;371:265-270 pubmedpublisher
Kim H, Kim J, Yu S, Lee Y, Park J, Choi R, et al. A Mechanism for microRNA Arm Switching Regulated by Uridylation. Mol Cell. 2020;78:1224-1236.e5 pubmedpublisher
Becattini S, Littmann E, Seok R, Amoretti L, Fontana E, Wright R, et al. Enhancing mucosal immunity by transient microbiota depletion. Nat Commun. 2020;11:4475 pubmedpublisher
Duncan A, Heyer M, Ishikawa M, Caligiuri S, Liu X, Chen Z, et al. Habenular TCF7L2 links nicotine addiction to diabetes. Nature. 2019;574:372-377 pubmedpublisher
Hu C, Wang W, Brind Amour J, Singh P, Reeves G, Lorincz M, et al. Vertebrate diapause preserves organisms long term through Polycomb complex members. Science. 2020;367:870-874 pubmedpublisher
Mena E, Kjolby R, Saxton R, Werner A, Lew B, Boyle J, et al. Dimerization quality control ensures neuronal development and survival. Science. 2018;362: pubmedpublisher
Huang H, Weng H, Zhou K, Wu T, Zhao B, Sun M, et al. Histone H3 trimethylation at lysine 36 guides m6A RNA modification co-transcriptionally. Nature. 2019;567:414-419 pubmedpublisher
Stokes J, Yang K, Swanson K, Jin W, Cubillos Ruiz A, Donghia N, et al. A Deep Learning Approach to Antibiotic Discovery. Cell. 2020;180:688-702.e13 pubmedpublisher
Galmozzi A, Kok B, Kim A, Montenegro Burke J, Lee J, Spreafico R, et al. PGRMC2 is an intracellular haem chaperone critical for adipocyte function. Nature. 2019;576:138-142 pubmedpublisher
Dong J, Lee Y, Kirmiz M, Palacio S, Dumitras C, Moreno C, et al. A toolbox of nanobodies developed and validated for use as intrabodies and nanoscale immunolabels in brain neurons. elife. 2019;8: pubmedpublisher
Torres R, Lang U, Hejna M, Shelton S, Joseph N, Shain A, et al. MicroRNA Ratios Distinguish Melanomas from Nevi. J Invest Dermatol. 2020;140:164-173.e7 pubmedpublisher
Lambo S, Gröbner S, Rausch T, Waszak S, Schmidt C, Gorthi A, et al. The molecular landscape of ETMR at diagnosis and relapse. Nature. 2019;576:274-280 pubmedpublisher

Golden Macaque Slot Machine

Soyano T, Shimoda Y, Kawaguchi M, Hayashi M. A shared gene drives lateral root development and root nodule symbiosis pathways in Lotus. Science. 2019;366:1021-1023 pubmedpublisher
Nam S, Gupta V, Lee H, Lee J, Wisdom K, Varma S, et al. Cell cycle progression in confining microenvironments is regulated by a growth-responsive TRPV4-PI3K/Akt-p27Kip1 signaling axis. Sci Adv. 2019;5:eaaw6171 pubmedpublisher
Nagamatsu G, Shimamoto S, Hamazaki N, Nishimura Y, Hayashi K. Mechanical stress accompanied with nuclear rotation is involved in the dormant state of mouse oocytes. Sci Adv. 2019;5:eaav9960 pubmedpublisher
Hyun Y, Vincent C, Tilmes V, Bergonzi S, Kiefer C, Richter R, et al. A regulatory circuit conferring varied flowering response to cold in annual and perennial plants. Science. 2019;363:409-412 pubmedpublisher
Lee M, Siddoway B, Kaeser G, Segota I, Rivera R, Romanow W, et al. Somatic APP gene recombination in Alzheimer's disease and normal neurons. Nature. 2018;563:639-645 pubmedpublisher
Meertens L, Hafirassou M, Couderc T, Bonnet Madin L, Kril V, Kummerer B, et al. FHL1 is a major host factor for chikungunya virus infection. Nature. 2019;: pubmedpublisher
Ombrato L, Nolan E, Kurelac I, Mavousian A, Bridgeman V, Heinze I, et al. Metastatic-niche labelling reveals parenchymal cells with stem features. Nature. 2019;572:603-608 pubmedpublisher
De Cecco M, Ito T, Petrashen A, Elias A, Skvir N, Criscione S, et al. L1 drives IFN in senescent cells and promotes age-associated inflammation. Nature. 2019;566:73-78 pubmedpublisher
Cabianca D, Muñoz Jiménez C, Kalck V, Gaidatzis D, Padeken J, Seeber A, et al. Active chromatin marks drive spatial sequestration of heterochromatin in C. elegans nuclei. Nature. 2019;: pubmedpublisher
Wang Y, Kim T, Fouladdel S, Zhang Z, Soni P, Qin A, et al. PD-L1 Expression in Circulating Tumor Cells Increases during Radio(chemo)therapy and Indicates Poor Prognosis in Non-small Cell Lung Cancer. Sci Rep. 2019;9:566 pubmedpublisher
Chopra S, Giovanelli P, Alvarado Vazquez P, Alonso S, Song M, Sandoval T, et al. IRE1α-XBP1 signaling in leukocytes controls prostaglandin biosynthesis and pain. Science. 2019;365: pubmedpublisher
Wilson S, Hawco N, Armbrust E, Barone B, Björkman K, Boysen A, et al. Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean. Science. 2019;365:1040-1044 pubmedpublisher
Porpiglia E, Hidalgo D, Koulnis M, Tzafriri A, Socolovsky M. Stat5 signaling specifies basal versus stress erythropoietic responses through distinct binary and graded dynamic modalities. PLoS Biol. 2012;10:e1001383 pubmedpublisher
Booth M, Branco M, Ficz G, Oxley D, Krueger F, Reik W, et al. Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution. Science. 2012;336:934-7 pubmedpublisher
Lee J, Termglinchan V, Diecke S, Itzhaki I, Lam C, Garg P, et al. Activation of PDGF pathway links LMNA mutation to dilated cardiomyopathy. Nature. 2019;572:335-340 pubmedpublisher
Wu X, Zhou T, Zhu J, Zhang B, Georgiev I, Wang C, et al. Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing. Science. 2011;333:1593-602 pubmedpublisher
Younis I, Dittmar K, Wang W, Foley S, Berg M, Hu K, et al. Minor introns are embedded molecular switches regulated by highly unstable U6atac snRNA. elife. 2013;2:e00780 pubmedpublisher
Khila A, Abouheif E, Rowe L. Function, developmental genetics, and fitness consequences of a sexually antagonistic trait. Science. 2012;336:585-9 pubmedpublisher
Seth D, Hausladen A, Wang Y, Stamler J. Endogenous protein S-Nitrosylation in E. coli: regulation by OxyR. Science. 2012;336:470-3 pubmedpublisher
Abbink P, Mercado N, Nkolola J, Peterson R, Tuyishime H, McMahan K, et al. Lack of therapeutic efficacy of an antibody to α4β7 in SIVmac251-infected rhesus macaques. Science. 2019;365:1029-1033 pubmedpublisher
St John A, Rathore A, Raghavan B, Ng M, Abraham S. Contributions of mast cells and vasoactive products, leukotrienes and chymase, to dengue virus-induced vascular leakage. elife. 2013;2:e00481 pubmedpublisher
Hashimoto S, Boissel S, Zarhrate M, Rio M, Munnich A, Egly J, et al. MED23 mutation links intellectual disability to dysregulation of immediate early gene expression. Science. 2011;333:1161-3 pubmedpublisher
Morf J, Rey G, Schneider K, Stratmann M, Fujita J, Naef F, et al. Cold-inducible RNA-binding protein modulates circadian gene expression posttranscriptionally. Science. 2012;338:379-83 pubmedpublisher
Menacho Márquez M, García Escudero R, Ojeda V, Abad A, Delgado P, Costa C, et al. The Rho exchange factors Vav2 and Vav3 favor skin tumor initiation and promotion by engaging extracellular signaling loops. PLoS Biol. 2013;11:e1001615 pubmedpublisher
Macaque
Makarem M, Kannan N, Nguyen L, Knapp D, Balani S, Prater M, et al. Developmental changes in the in vitro activated regenerative activity of primitive mammary epithelial cells. PLoS Biol. 2013;11:e1001630 pubmedpublisher
Castellana D, Paus R, Perez Moreno M. Macrophages contribute to the cyclic activation of adult hair follicle stem cells. PLoS Biol. 2014;12:e1002002 pubmedpublisher
Thompson D, Roy S, Chan M, Styczynsky M, Pfiffner J, French C, et al. Evolutionary principles of modular gene regulation in yeasts. elife. 2013;2:e00603 pubmedpublisher
Sims R, Rojas L, Beck D, Bonasio R, Schüller R, Drury W, et al. The C-terminal domain of RNA polymerase II is modified by site-specific methylation. Science. 2011;332:99-103 pubmedpublisher
Mohd Sarip A, Lagarou A, Doyen C, van der Knaap J, Aslan U, Bezstarosti K, et al. Transcription-independent function of Polycomb group protein PSC in cell cycle control. Science. 2012;336:744-7 pubmedpublisher
Grima B, Dognon A, Lamouroux A, Chélot E, Rouyer F. CULLIN-3 controls TIMELESS oscillations in the Drosophila circadian clock. PLoS Biol. 2012;10:e1001367 pubmedpublisher
Szabó A, Papin C, Zorn D, Ponien P, Weber F, Raabe T, et al. The CK2 kinase stabilizes CLOCK and represses its activity in the Drosophila circadian oscillator. PLoS Biol. 2013;11:e1001645 pubmedpublisher
Zofall M, Yamanaka S, REYES TURCU F, Zhang K, Rubin C, Grewal S. RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation. Science. 2012;335:96-100 pubmedpublisher
McCloskey A, Taniguchi I, Shinmyozu K, Ohno M. hnRNP C tetramer measures RNA length to classify RNA polymerase II transcripts for export. Science. 2012;335:1643-6 pubmedpublisher

Golden Macaque Free Slot

Oldenburg M, Krüger A, Ferstl R, Kaufmann A, Nees G, Sigmund A, et al. TLR13 recognizes bacterial 23S rRNA devoid of erythromycin resistance-forming modification. Science. 2012;337:1111-5 pubmedpublisher
Cervettini D, Tang S, Fried S, Willis J, Funke L, Colwell L, et al. Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase-tRNA pairs. Nat Biotechnol. 2020;: pubmedpublisher
Stadtmauer E, Fraietta J, DAVIS M, Cohen A, Weber K, Lancaster E, et al. CRISPR-engineered T cells in patients with refractory cancer. Science. 2020;: pubmedpublisher

Golden Macaque Slot Demo

Corman V, Landt O, Kaiser M, Molenkamp R, Meijer A, Chu D, et al. Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR. Euro Surveill. 2020;25: pubmedpublisher
Nott A, Holtman I, Coufal N, Schlachetzki J, Yu M, Hu R, et al. Brain cell type-specific enhancer-promoter interactome maps and disease-risk association. Science. 2019;366:1134-1139 pubmedpublisher
Noda S, Kawashima N, Yamamoto M, Hashimoto K, Nara K, Sekiya I, et al. Effect of cell culture density on dental pulp-derived mesenchymal stem cells with reference to osteogenic differentiation. Sci Rep. 2019;9:5430 pubmedpublisher
Litke J, Jaffrey S. Highly efficient expression of circular RNA aptamers in cells using autocatalytic transcripts. Nat Biotechnol. 2019;37:667-675 pubmedpublisher
Kovacic R. The 0 degree C closed complexes between Escherichia coli RNA polymerase and two promoters, T7-A3 and lacUV5. J Biol Chem. 1987;262:13654-61 pubmed
Tan P, Pepin E, Lavoie J. Mouse Adipose Tissue Collection and Processing for RNA Analysis. J Vis Exp. 2018;: pubmedpublisher
DiTroia S, Percharde M, Guerquin M, Wall E, Collignon E, Ebata K, et al. Maternal vitamin C regulates reprogramming of DNA methylation and germline development. Nature. 2019;573:271-275 pubmedpublisher
Zhao N, Kamijo K, Fox P, Oda H, Morisaki T, Sato Y, et al. A genetically encoded probe for imaging nascent and mature HA-tagged proteins in vivo. Nat Commun. 2019;10:2947 pubmedpublisher
Zhang F, Zarkada G, Han J, Li J, Dubrac A, Ola R, et al. Lacteal junction zippering protects against diet-induced obesity. Science. 2018;361:599-603 pubmedpublisher
Nicetto D, Donahue G, Jain T, Peng T, Sidoli S, Sheng L, et al. H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification. Science. 2019;363:294-297 pubmedpublisher
Oginuma M, Harima Y, Tarazona O, Diaz Cuadros M, Michaut A, Ishitani T, et al. Intracellular pH controls WNT downstream of glycolysis in amniote embryos. Nature. 2020;: pubmedpublisher
Zullo J, Drake D, Aron L, O Hern P, Dhamne S, Davidsohn N, et al. Regulation of lifespan by neural excitation and REST. Nature. 2019;574:359-364 pubmedpublisher
Liu Y, You Y, Lu Z, Yang J, Li P, Liu L, et al. N6-methyladenosine RNA modification-mediated cellular metabolism rewiring inhibits viral replication. Science. 2019;365:1171-1176 pubmedpublisher
Rosshart S, Herz J, Vassallo B, Hunter A, Wall M, Badger J, et al. Laboratory mice born to wild mice have natural microbiota and model human immune responses. Science. 2019;365: pubmedpublisher
Hilton H, Rubinstein N, Janki P, Ireland A, Bernstein N, Fong N, et al. Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity. PLoS Biol. 2019;17:e3000528 pubmedpublisher
Yang J, Chen J, Del Carmen Vitery M, Osei Owusu J, Chu J, Yu H, et al. PAC, an evolutionarily conserved membrane protein, is a proton-activated chloride channel. Science. 2019;364:395-399 pubmedpublisher
Schuman M, Barthel K, Baldwin I. Herbivory-induced volatiles function as defenses increasing fitness of the native plant Nicotiana attenuata in nature. elife. 2012;1:e00007 pubmedpublisher
Chirgwin J, Przybyla A, MacDonald R, Rutter W. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry. 1979;18:5294-9 pubmed
Chomczynski P, Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem. 1987;162:156-9 pubmed
Chomczynski P, Sacchi N. The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: twenty-something years on. Nat Protoc. 2006;1:581-5 pubmed
  • Materials and Methods [ISSN : 2329-5139] is a unique online journal with regularly updated review articles on laboratory materials and methods. If you are interested in contributing a manuscript or suggesting a topic, please leave us feedback.